No. words: 3013; after pruning: 2961


Histogram of relative pair offsets, for read pairs with multiple alignments:
80     4
81     4
82    16
99    12

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.6 (1,1:582)  563  0.00 0.00 0.00  (UMN171F)_D06_BF429203Ld03P027E02P027E081F1_042.ab1        1   580 (175)  C (UMN171R)_D06_BF429203Ld03P027E02P027E081R1_042.ab1   (155)   583     4 *
Merge:(0)    2    0.0 7.5 (1,1:601)  559  0.83 0.17 0.17  (UMN172F)_G10_BF429203Ld03P027E02P027E081F1_068.ab1        3   601 (183)  C (UMN172R)_G10_BF429203Ld03P027E02P027E081R1_068.ab1   (136)   600     2 *
Fail: (1)  149  -49.9 -2.3 (2,2:-15)  692  1.72 0.00 0.26  (UMN171F)_D06_BF429203Ld03P027E02P027E081F1_042.ab1        1   755 (0)    (UMN172F)_G10_BF429203Ld03P027E02P027E081F1_068.ab1       18   770 (14) *
  Worst pair: offset 2 
LLR breakdown: discreps: -66.0 (<20 part: -0.3 (#=1), >20:-65.7 (#=13); in HQ: -66.0, out HQ 0.0), match: 16.1  total: -49.9  677  1.63 0.00 0.27  (UMN171R)_D06_BF429203Ld03P027E02P027E081R1_042.ab1        1   735 (3)    (UMN172R)_G10_BF429203Ld03P027E02P027E081R1_068.ab1        4   736 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0
-49.9       0        1

Gap   # merges  # failures
 size
 2       1        0
 3       1        0
149       0        1

Offset
  0       3 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  282 nodes

 143 str. conn. components

Path
    1  C (UMN172R)_G10_BF429203Ld03P027E02P027E081R1_068.ab1   736 
  638    (UMN172F)_G10_BF429203Ld03P027E02P027E081F1_068.ab1   503 
  650  C (UMN172R)_G10_BF429203Ld03P027E02P027E081R1_068.ab1    87 
  654    (UMN172F)_G10_BF429203Ld03P027E02P027E081F1_068.ab1   519 
  658  C (UMN172R)_G10_BF429203Ld03P027E02P027E081R1_068.ab1    79 
  674    (UMN172F)_G10_BF429203Ld03P027E02P027E081F1_068.ab1   539 
  678  C (UMN172R)_G10_BF429203Ld03P027E02P027E081R1_068.ab1    59 
  686    (UMN172F)_G10_BF429203Ld03P027E02P027E081F1_068.ab1   551 
  715  C (UMN172R)_G10_BF429203Ld03P027E02P027E081R1_068.ab1    22 
  723    (UMN172F)_G10_BF429203Ld03P027E02P027E081F1_068.ab1   588 
Contig length: old 918, new 919

Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C (UMN171R)_D06_BF429203Ld03P027E02P027E081R1_042.ab1   738 
  644    (UMN171F)_D06_BF429203Ld03P027E02P027E081F1_042.ab1   489 
Contig length: old 910, new 910

Contig length: old 919, new 919
New start: 0 

Contig length: old 910, new 910
New start: 0