No. words: 1495; after pruning: 1469


Histogram of relative pair offsets, for read pairs with multiple alignments:
81     2
83     2
99     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 11.6 (1,1:593)  564  0.00 0.00 0.17  (UMN171F)_E06_BF429203Ld04P027E02P027E081F1_040.ab1        9   594 (141)  C (UMN171R)_E06_BF429203Ld04P027E02P027E081R1_040.ab1   (175)   585     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1  C (UMN171R)_E06_BF429203Ld04P027E02P027E081R1_040.ab1   760 
  665    (UMN171F)_E06_BF429203Ld04P027E02P027E081F1_040.ab1   498 
Contig length: old 901, new 902

Contig length: old 902, new 902
New start: 0