No. words: 1568; after pruning: 1542


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.8 (1,1:627)  590  0.00 0.16 0.00  (UMN169F)_B09_BF483930Ld12P027E03P027E091F1_077.ab1        1   628 (150)  C (UMN169R)_B09_BF483930Ld12P027E03P027E091R1_077.ab1   (161)   629     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C (UMN169R)_B09_BF483930Ld12P027E03P027E091R1_077.ab1   790 
  188    (UMN169F)_B09_BF483930Ld12P027E03P027E091F1_077.ab1    26 
  192  C (UMN169R)_B09_BF483930Ld12P027E03P027E091R1_077.ab1   599 
  196    (UMN169F)_B09_BF483930Ld12P027E03P027E091F1_077.ab1    34 
  208  C (UMN169R)_B09_BF483930Ld12P027E03P027E091R1_077.ab1   583 
  212    (UMN169F)_B09_BF483930Ld12P027E03P027E091F1_077.ab1    50 
  236  C (UMN169R)_B09_BF483930Ld12P027E03P027E091R1_077.ab1   555 
  240    (UMN169F)_B09_BF483930Ld12P027E03P027E091F1_077.ab1    78 
  252  C (UMN169R)_B09_BF483930Ld12P027E03P027E091R1_077.ab1   539 
  256    (UMN169F)_B09_BF483930Ld12P027E03P027E091F1_077.ab1    94 
  264  C (UMN169R)_B09_BF483930Ld12P027E03P027E091R1_077.ab1   527 
  280    (UMN169F)_B09_BF483930Ld12P027E03P027E091F1_077.ab1   118 
  296  C (UMN169R)_B09_BF483930Ld12P027E03P027E091R1_077.ab1   495 
  304    (UMN169F)_B09_BF483930Ld12P027E03P027E091F1_077.ab1   142 
  320  C (UMN169R)_B09_BF483930Ld12P027E03P027E091R1_077.ab1   471 
  344    (UMN169F)_B09_BF483930Ld12P027E03P027E091F1_077.ab1   182 
  356  C (UMN169R)_B09_BF483930Ld12P027E03P027E091R1_077.ab1   435 
  368    (UMN169F)_B09_BF483930Ld12P027E03P027E091F1_077.ab1   206 
  540  C (UMN169R)_B09_BF483930Ld12P027E03P027E091R1_077.ab1   251 
  624    (UMN169F)_B09_BF483930Ld12P027E03P027E091F1_077.ab1   462 
  636  C (UMN169R)_B09_BF483930Ld12P027E03P027E091R1_077.ab1   155 
  644    (UMN169F)_B09_BF483930Ld12P027E03P027E091F1_077.ab1   482 
  652  C (UMN169R)_B09_BF483930Ld12P027E03P027E091R1_077.ab1   139 
  728    (UMN169F)_B09_BF483930Ld12P027E03P027E091F1_077.ab1   566 
  736  C (UMN169R)_B09_BF483930Ld12P027E03P027E091R1_077.ab1    55 
  752    (UMN169F)_B09_BF483930Ld12P027E03P027E091F1_077.ab1   590 
  756  C (UMN169R)_B09_BF483930Ld12P027E03P027E091R1_077.ab1    35 
  760    (UMN169F)_B09_BF483930Ld12P027E03P027E091F1_077.ab1   598 
  768  C (UMN169R)_B09_BF483930Ld12P027E03P027E091R1_077.ab1    23 
  772    (UMN169F)_B09_BF483930Ld12P027E03P027E091F1_077.ab1   610 
Contig length: old 940, new 940

Contig length: old 940, new 940
New start: 0