No. words: 1512; after pruning: 1486


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 12.3 (1,1:624)  583  0.00 0.16 0.00  (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1        8   625 (139)  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1   (129)   619     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1   748 
  154    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1    31 
  162  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1   587 
  170    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1    47 
  190  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1   559 
  198    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1    75 
  206  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1   543 
  214    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1    91 
  218  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1   531 
  238    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1   115 
  250  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1   499 
  302    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1   179 
  306  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1   443 
  338    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1   215 
  342  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1   407 
  378    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1   255 
  386  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1   363 
  406    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1   283 
  486  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1   263 
  510    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1   387 
  522  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1   227 
  554    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1   431 
  558  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1   191 
  562    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1   439 
  594  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1   155 
  602    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1   479 
  622  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1   127 
  634    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1   511 
  638  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1   111 
  650    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1   527 
  654  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1    95 
  686    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1   563 
  694  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1    55 
  706    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1   583 
  710  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1    39 
  722    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1   599 
  726  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1    23 
  730    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1   607 
  734  C (UMN169R)_D09_BF483930Ld14P027E03P027E091R1_073.ab1    15 
  738    (UMN169F)_D09_BF483930Ld14P027E03P027E091F1_073.ab1   615 
Contig length: old 887, new 887

Contig length: old 887, new 887
New start: 0