No. words: 1145; after pruning: 1119


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 2.4 (1,1:431)  280  5.11 0.00 0.28  (UMN169F)_E09_BF483930Ld15P027E03P027E091F1_071.ab1        5   356 (0)  C (UMN169R)_E09_BF483930Ld15P027E03P027E091R1_071.ab1   (362)   427    77 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  136 nodes

 70 str. conn. components

Path
    1  C (UMN169R)_E09_BF483930Ld15P027E03P027E091R1_071.ab1   789 
Contig length: old 789, new 789

Contig length: old 789, new 789
New start: 0