No. words: 1346; after pruning: 1320


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.6 (1,1:627)  541  0.00 0.00 0.00  (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1       59   628 (148)  C (UMN169R)_F09_BF483930Ld16P027E03P027E091R1_069.ab1   (0)   570     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1    (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1     1 
   98  C (UMN169R)_F09_BF483930Ld16P027E03P027E091R1_069.ab1   531 
  126    (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1   126 
  134  C (UMN169R)_F09_BF483930Ld16P027E03P027E091R1_069.ab1   495 
  198    (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1   198 
  206  C (UMN169R)_F09_BF483930Ld16P027E03P027E091R1_069.ab1   423 
  210    (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1   210 
  218  C (UMN169R)_F09_BF483930Ld16P027E03P027E091R1_069.ab1   411 
  230    (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1   230 
  266  C (UMN169R)_F09_BF483930Ld16P027E03P027E091R1_069.ab1   363 
  310    (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1   310 
  338  C (UMN169R)_F09_BF483930Ld16P027E03P027E091R1_069.ab1   291 
  346    (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1   346 
  358  C (UMN169R)_F09_BF483930Ld16P027E03P027E091R1_069.ab1   271 
  434    (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1   434 
  438  C (UMN169R)_F09_BF483930Ld16P027E03P027E091R1_069.ab1   191 
  450    (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1   450 
  474  C (UMN169R)_F09_BF483930Ld16P027E03P027E091R1_069.ab1   155 
  478    (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1   478 
  494  C (UMN169R)_F09_BF483930Ld16P027E03P027E091R1_069.ab1   135 
  510    (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1   510 
  514  C (UMN169R)_F09_BF483930Ld16P027E03P027E091R1_069.ab1   115 
  518    (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1   518 
  522  C (UMN169R)_F09_BF483930Ld16P027E03P027E091R1_069.ab1   107 
  542    (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1   542 
  546  C (UMN169R)_F09_BF483930Ld16P027E03P027E091R1_069.ab1    83 
  550    (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1   550 
  554  C (UMN169R)_F09_BF483930Ld16P027E03P027E091R1_069.ab1    75 
  566    (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1   566 
  574  C (UMN169R)_F09_BF483930Ld16P027E03P027E091R1_069.ab1    55 
  586    (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1   586 
  594  C (UMN169R)_F09_BF483930Ld16P027E03P027E091R1_069.ab1    35 
  602    (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1   602 
  606  C (UMN169R)_F09_BF483930Ld16P027E03P027E091R1_069.ab1    23 
  610    (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1   610 
  614  C (UMN169R)_F09_BF483930Ld16P027E03P027E091R1_069.ab1    15 
  618    (UMN169F)_F09_BF483930Ld16P027E03P027E091F1_069.ab1   618 
Contig length: old 776, new 776

Contig length: old 776, new 776
New start: 0