No. words: 1552; after pruning: 1526


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.8 (1,1:627)  591  0.00 0.16 0.00  (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1        1   628 (138)  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1   (157)   629     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1   786 
  192    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1    34 
  204  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1   583 
  216    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1    58 
  248  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1   539 
  276    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1   118 
  292  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1   495 
  332    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1   174 
  336  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1   451 
  344    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1   186 
  348  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1   439 
  364    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1   206 
  380  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1   407 
  412    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1   254 
  428  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1   359 
  448    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1   290 
  464  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1   323 
  476    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1   318 
  528  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1   259 
  548    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1   390 
  580  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1   207 
  588    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1   430 
  596  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1   191 
  604    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1   446 
  660  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1   127 
  664    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1   506 
  680  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1   107 
  688    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1   530 
  696  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1    91 
  700    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1   542 
  704  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1    83 
  708    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1   550 
  716  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1    71 
  720    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1   562 
  732  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1    55 
  748    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1   590 
  752  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1    35 
  760    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1   602 
  764  C (UMN169R)_G09_BF483930Ld17P027E03P027E091R1_067.ab1    23 
  768    (UMN169F)_G09_BF483930Ld17P027E03P027E091F1_067.ab1   610 
Contig length: old 924, new 924

Contig length: old 924, new 924
New start: 0