No. words: 1555; after pruning: 1515


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:626)  586  0.00 0.32 0.00  (UMN169F)_A10_BF483930Ld19P027E03P027E091F1_080.ab1        1   626 (140)  C (UMN169R)_A10_BF483930Ld19P027E03P027E091R1_080.ab1   (161)   628     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C (UMN169R)_A10_BF483930Ld19P027E03P027E091R1_080.ab1   789 
  197    (UMN169F)_A10_BF483930Ld19P027E03P027E091F1_080.ab1    34 
  205  C (UMN169R)_A10_BF483930Ld19P027E03P027E091R1_080.ab1   585 
  217    (UMN169F)_A10_BF483930Ld19P027E03P027E091F1_080.ab1    54 
  233  C (UMN169R)_A10_BF483930Ld19P027E03P027E091R1_080.ab1   557 
  237    (UMN169F)_A10_BF483930Ld19P027E03P027E091F1_080.ab1    74 
  257  C (UMN169R)_A10_BF483930Ld19P027E03P027E091R1_080.ab1   533 
  281    (UMN169F)_A10_BF483930Ld19P027E03P027E091F1_080.ab1   118 
  293  C (UMN169R)_A10_BF483930Ld19P027E03P027E091R1_080.ab1   497 
  305    (UMN169F)_A10_BF483930Ld19P027E03P027E091F1_080.ab1   142 
  321  C (UMN169R)_A10_BF483930Ld19P027E03P027E091R1_080.ab1   469 
  333    (UMN169F)_A10_BF483930Ld19P027E03P027E091F1_080.ab1   170 
  353  C (UMN169R)_A10_BF483930Ld19P027E03P027E091R1_080.ab1   437 
  373    (UMN169F)_A10_BF483930Ld19P027E03P027E091F1_080.ab1   210 
  545  C (UMN169R)_A10_BF483930Ld19P027E03P027E091R1_080.ab1   245 
  553    (UMN169F)_A10_BF483930Ld19P027E03P027E091F1_080.ab1   390 
  565  C (UMN169R)_A10_BF483930Ld19P027E03P027E091R1_080.ab1   225 
  581    (UMN169F)_A10_BF483930Ld19P027E03P027E091F1_080.ab1   418 
  585  C (UMN169R)_A10_BF483930Ld19P027E03P027E091R1_080.ab1   205 
  593    (UMN169F)_A10_BF483930Ld19P027E03P027E091F1_080.ab1   430 
  637  C (UMN169R)_A10_BF483930Ld19P027E03P027E091R1_080.ab1   153 
  641    (UMN169F)_A10_BF483930Ld19P027E03P027E091F1_080.ab1   478 
  657  C (UMN169R)_A10_BF483930Ld19P027E03P027E091R1_080.ab1   133 
  661    (UMN169F)_A10_BF483930Ld19P027E03P027E091F1_080.ab1   498 
  681  C (UMN169R)_A10_BF483930Ld19P027E03P027E091R1_080.ab1   109 
  685    (UMN169F)_A10_BF483930Ld19P027E03P027E091F1_080.ab1   522 
  697  C (UMN169R)_A10_BF483930Ld19P027E03P027E091R1_080.ab1    93 
  701    (UMN169F)_A10_BF483930Ld19P027E03P027E091F1_080.ab1   538 
  713  C (UMN169R)_A10_BF483930Ld19P027E03P027E091R1_080.ab1    77 
  725    (UMN169F)_A10_BF483930Ld19P027E03P027E091F1_080.ab1   562 
  741  C (UMN169R)_A10_BF483930Ld19P027E03P027E091R1_080.ab1    49 
  749    (UMN169F)_A10_BF483930Ld19P027E03P027E091F1_080.ab1   586 
  757  C (UMN169R)_A10_BF483930Ld19P027E03P027E091R1_080.ab1    33 
  765    (UMN169F)_A10_BF483930Ld19P027E03P027E091F1_080.ab1   602 
  769  C (UMN169R)_A10_BF483930Ld19P027E03P027E091R1_080.ab1    21 
  785    (UMN169F)_A10_BF483930Ld19P027E03P027E091F1_080.ab1   622 
Contig length: old 928, new 929

Contig length: old 929, new 929
New start: 0 
S Change at: 42; seg lengths: entry 1, contig 1