No. words: 1528; after pruning: 1502


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 12.8 (1,1:630)  592  0.00 0.16 0.00  (UMN169F)_B10_BF483930Ld20P027E03P027E091F1_078.ab1        1   630 (148)  C (UMN169R)_B10_BF483930Ld20P027E03P027E091R1_078.ab1   (118)   632     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C (UMN169R)_B10_BF483930Ld20P027E03P027E091R1_078.ab1   750 
  154    (UMN169F)_B10_BF483930Ld20P027E03P027E091F1_078.ab1    35 
  162  C (UMN169R)_B10_BF483930Ld20P027E03P027E091R1_078.ab1   589 
  170    (UMN169F)_B10_BF483930Ld20P027E03P027E091F1_078.ab1    51 
  218  C (UMN169R)_B10_BF483930Ld20P027E03P027E091R1_078.ab1   533 
  226    (UMN169F)_B10_BF483930Ld20P027E03P027E091F1_078.ab1   107 
  230  C (UMN169R)_B10_BF483930Ld20P027E03P027E091R1_078.ab1   521 
  238    (UMN169F)_B10_BF483930Ld20P027E03P027E091F1_078.ab1   119 
  250  C (UMN169R)_B10_BF483930Ld20P027E03P027E091R1_078.ab1   501 
  302    (UMN169F)_B10_BF483930Ld20P027E03P027E091F1_078.ab1   183 
  306  C (UMN169R)_B10_BF483930Ld20P027E03P027E091R1_078.ab1   445 
  330    (UMN169F)_B10_BF483930Ld20P027E03P027E091F1_078.ab1   211 
  334  C (UMN169R)_B10_BF483930Ld20P027E03P027E091R1_078.ab1   417 
  358    (UMN169F)_B10_BF483930Ld20P027E03P027E091F1_078.ab1   239 
  362  C (UMN169R)_B10_BF483930Ld20P027E03P027E091R1_078.ab1   389 
  366    (UMN169F)_B10_BF483930Ld20P027E03P027E091F1_078.ab1   247 
  386  C (UMN169R)_B10_BF483930Ld20P027E03P027E091R1_078.ab1   365 
  434    (UMN169F)_B10_BF483930Ld20P027E03P027E091F1_078.ab1   315 
  486  C (UMN169R)_B10_BF483930Ld20P027E03P027E091R1_078.ab1   265 
  510    (UMN169F)_B10_BF483930Ld20P027E03P027E091F1_078.ab1   391 
  522  C (UMN169R)_B10_BF483930Ld20P027E03P027E091R1_078.ab1   229 
  550    (UMN169F)_B10_BF483930Ld20P027E03P027E091F1_078.ab1   431 
  558  C (UMN169R)_B10_BF483930Ld20P027E03P027E091R1_078.ab1   193 
  562    (UMN169F)_B10_BF483930Ld20P027E03P027E091F1_078.ab1   443 
  594  C (UMN169R)_B10_BF483930Ld20P027E03P027E091R1_078.ab1   157 
  598    (UMN169F)_B10_BF483930Ld20P027E03P027E091F1_078.ab1   479 
  622  C (UMN169R)_B10_BF483930Ld20P027E03P027E091R1_078.ab1   129 
  658    (UMN169F)_B10_BF483930Ld20P027E03P027E091F1_078.ab1   539 
  662  C (UMN169R)_B10_BF483930Ld20P027E03P027E091R1_078.ab1    89 
  686    (UMN169F)_B10_BF483930Ld20P027E03P027E091F1_078.ab1   567 
  694  C (UMN169R)_B10_BF483930Ld20P027E03P027E091R1_078.ab1    57 
  706    (UMN169F)_B10_BF483930Ld20P027E03P027E091F1_078.ab1   587 
  710  C (UMN169R)_B10_BF483930Ld20P027E03P027E091R1_078.ab1    41 
  722    (UMN169F)_B10_BF483930Ld20P027E03P027E091F1_078.ab1   603 
  726  C (UMN169R)_B10_BF483930Ld20P027E03P027E091R1_078.ab1    25 
  742    (UMN169F)_B10_BF483930Ld20P027E03P027E091F1_078.ab1   623 
Contig length: old 897, new 897

Contig length: old 897, new 897
New start: 0