No. words: 1293; after pruning: 1267


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.4 (1,1:730)  517  1.25 0.00 0.00  (UMN169F)_E11_BG263585At02P081B02P081B081F1_087.ab1       61   622 (0)  C (UMN169R)_E11_BG263585At02P081B02P081B081R1_087.ab1   (0)   671   110 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1    (UMN169F)_E11_BG263585At02P081B02P081B081F1_087.ab1     1 
  266  C (UMN169R)_E11_BG263585At02P081B02P081B081R1_087.ab1   466 
  322    (UMN169F)_E11_BG263585At02P081B02P081B081F1_087.ab1   322 
  338  C (UMN169R)_E11_BG263585At02P081B02P081B081R1_087.ab1   394 
  346    (UMN169F)_E11_BG263585At02P081B02P081B081F1_087.ab1   346 
  358  C (UMN169R)_E11_BG263585At02P081B02P081B081R1_087.ab1   374 
  382    (UMN169F)_E11_BG263585At02P081B02P081B081F1_087.ab1   382 
  390  C (UMN169R)_E11_BG263585At02P081B02P081B081R1_087.ab1   342 
Contig length: old 731, new 731

Contig length: old 731, new 731
New start: 0 
S Change at: 67; seg lengths: entry 4, contig 4
S Change at: 77; seg lengths: entry 4, contig 4
S Change at: 86; seg lengths: entry 1, contig 1