No. words: 1680; after pruning: 1654


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.8 (1,1:1553)  123  0.00 0.00 0.00  (UMN169F)_E10_BQ168706Ld18P081E05P081E111F1_072.ab1      698   823 (0)  C (UMN169R)_E10_BQ168706Ld18P081E05P081E111R1_072.ab1   (0)   857   732 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  64 nodes

 34 str. conn. components

Path
    1    (UMN169F)_E10_BQ168706Ld18P081E05P081E111F1_072.ab1     1 
  733  C (UMN169R)_E10_BQ168706Ld18P081E05P081E111R1_072.ab1   822 
  737    (UMN169F)_E10_BQ168706Ld18P081E05P081E111F1_072.ab1   737 
  753  C (UMN169R)_E10_BQ168706Ld18P081E05P081E111R1_072.ab1   802 
  757    (UMN169F)_E10_BQ168706Ld18P081E05P081E111F1_072.ab1   757 
  761  C (UMN169R)_E10_BQ168706Ld18P081E05P081E111R1_072.ab1   794 
  765    (UMN169F)_E10_BQ168706Ld18P081E05P081E111F1_072.ab1   765 
  773  C (UMN169R)_E10_BQ168706Ld18P081E05P081E111R1_072.ab1   782 
  805    (UMN169F)_E10_BQ168706Ld18P081E05P081E111F1_072.ab1   805 
  809  C (UMN169R)_E10_BQ168706Ld18P081E05P081E111R1_072.ab1   746 
Contig length: old 1554, new 1554

Contig length: old 1554, new 1554
New start: 0