No. words: 1056; after pruning: 1030


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:388)  370  0.00 0.00 0.51  USDA004F_G09_BE403420Ld01P004E01E07F1_068.ab1        1   390 (125)  C USDA004R_G09_BE403420Ld01P004E01E07R1_068.ab1   (153)   388     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1  C USDA004R_G09_BE403420Ld01P004E01E07R1_068.ab1   541 
  261    USDA004F_G09_BE403420Ld01P004E01E07F1_068.ab1   108 
  265  C USDA004R_G09_BE403420Ld01P004E01E07R1_068.ab1   277 
  273    USDA004F_G09_BE403420Ld01P004E01E07F1_068.ab1   120 
  281  C USDA004R_G09_BE403420Ld01P004E01E07R1_068.ab1   261 
  337    USDA004F_G09_BE403420Ld01P004E01E07F1_068.ab1   184 
  361  C USDA004R_G09_BE403420Ld01P004E01E07R1_068.ab1   181 
  369    USDA004F_G09_BE403420Ld01P004E01E07F1_068.ab1   216 
  417  C USDA004R_G09_BE403420Ld01P004E01E07R1_068.ab1   125 
  425    USDA004F_G09_BE403420Ld01P004E01E07F1_068.ab1   272 
  433  C USDA004R_G09_BE403420Ld01P004E01E07R1_068.ab1   109 
  437    USDA004F_G09_BE403420Ld01P004E01E07F1_068.ab1   284 
  453  C USDA004R_G09_BE403420Ld01P004E01E07R1_068.ab1    89 
  457    USDA004F_G09_BE403420Ld01P004E01E07F1_068.ab1   304 
  473  C USDA004R_G09_BE403420Ld01P004E01E07R1_068.ab1    69 
  477    USDA004F_G09_BE403420Ld01P004E01E07F1_068.ab1   324 
Contig length: old 667, new 668

Contig length: old 668, new 668
New start: 0