No. words: 1059; after pruning: 1033


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:390)  372  0.00 0.00 0.51  USDA004F_H09_BE403420Ld02P004E01E07F1_076.ab1        1   392 (122)  C USDA004R_H09_BE403420Ld02P004E01E07R1_076.ab1   (155)   390     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1  C USDA004R_H09_BE403420Ld02P004E01E07R1_076.ab1   545 
  235    USDA004F_H09_BE403420Ld02P004E01E07F1_076.ab1    80 
  239  C USDA004R_H09_BE403420Ld02P004E01E07R1_076.ab1   307 
  259    USDA004F_H09_BE403420Ld02P004E01E07F1_076.ab1   104 
  267  C USDA004R_H09_BE403420Ld02P004E01E07R1_076.ab1   279 
  279    USDA004F_H09_BE403420Ld02P004E01E07F1_076.ab1   124 
  287  C USDA004R_H09_BE403420Ld02P004E01E07R1_076.ab1   259 
  343    USDA004F_H09_BE403420Ld02P004E01E07F1_076.ab1   188 
  367  C USDA004R_H09_BE403420Ld02P004E01E07R1_076.ab1   179 
  371    USDA004F_H09_BE403420Ld02P004E01E07F1_076.ab1   216 
  419  C USDA004R_H09_BE403420Ld02P004E01E07R1_076.ab1   127 
  431    USDA004F_H09_BE403420Ld02P004E01E07F1_076.ab1   276 
  435  C USDA004R_H09_BE403420Ld02P004E01E07R1_076.ab1   111 
  443    USDA004F_H09_BE403420Ld02P004E01E07F1_076.ab1   288 
  455  C USDA004R_H09_BE403420Ld02P004E01E07R1_076.ab1    91 
  459    USDA004F_H09_BE403420Ld02P004E01E07F1_076.ab1   304 
  519  C USDA004R_H09_BE403420Ld02P004E01E07R1_076.ab1    28 
  527    USDA004F_H09_BE403420Ld02P004E01E07F1_076.ab1   372 
Contig length: old 668, new 669

Contig length: old 669, new 669
New start: 0