No. words: 1061; after pruning: 1035


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.1 (1,1:392)  375  0.00 0.00 0.26  USDA004F_A10_BE403420Ld03P004E01E07F1_069.ab1        5   393 (130)  C USDA004R_A10_BE403420Ld03P004E01E07R1_069.ab1   (150)   388     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  194 nodes

 99 str. conn. components

Path
    1  C USDA004R_A10_BE403420Ld03P004E01E07R1_069.ab1   538 
  234    USDA004F_A10_BE403420Ld03P004E01E07F1_069.ab1    88 
  242  C USDA004R_A10_BE403420Ld03P004E01E07R1_069.ab1   297 
  266    USDA004F_A10_BE403420Ld03P004E01E07F1_069.ab1   120 
  270  C USDA004R_A10_BE403420Ld03P004E01E07R1_069.ab1   269 
  338    USDA004F_A10_BE403420Ld03P004E01E07F1_069.ab1   192 
  346  C USDA004R_A10_BE403420Ld03P004E01E07R1_069.ab1   193 
  362    USDA004F_A10_BE403420Ld03P004E01E07F1_069.ab1   216 
  418  C USDA004R_A10_BE403420Ld03P004E01E07R1_069.ab1   121 
  426    USDA004F_A10_BE403420Ld03P004E01E07F1_069.ab1   280 
  430  C USDA004R_A10_BE403420Ld03P004E01E07R1_069.ab1   109 
  442    USDA004F_A10_BE403420Ld03P004E01E07F1_069.ab1   296 
  454  C USDA004R_A10_BE403420Ld03P004E01E07R1_069.ab1    85 
  462    USDA004F_A10_BE403420Ld03P004E01E07F1_069.ab1   316 
  474  C USDA004R_A10_BE403420Ld03P004E01E07R1_069.ab1    65 
  478    USDA004F_A10_BE403420Ld03P004E01E07F1_069.ab1   332 
Contig length: old 668, new 669

Contig length: old 669, new 669
New start: 0