No. words: 1048; after pruning: 1022


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:389)  371  0.00 0.00 0.51  USDA004F_C10_BE403420Ld05P004E01E07F1_070.ab1        1   391 (119)  C USDA004R_C10_BE403420Ld05P004E01E07R1_070.ab1   (149)   389     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1  C USDA004R_C10_BE403420Ld05P004E01E07R1_070.ab1   538 
  257    USDA004F_C10_BE403420Ld05P004E01E07F1_070.ab1   108 
  261  C USDA004R_C10_BE403420Ld05P004E01E07R1_070.ab1   278 
  269    USDA004F_C10_BE403420Ld05P004E01E07F1_070.ab1   120 
  277  C USDA004R_C10_BE403420Ld05P004E01E07R1_070.ab1   262 
  329    USDA004F_C10_BE403420Ld05P004E01E07F1_070.ab1   180 
  349  C USDA004R_C10_BE403420Ld05P004E01E07R1_070.ab1   190 
  361    USDA004F_C10_BE403420Ld05P004E01E07F1_070.ab1   212 
  413  C USDA004R_C10_BE403420Ld05P004E01E07R1_070.ab1   126 
  417    USDA004F_C10_BE403420Ld05P004E01E07F1_070.ab1   268 
  429  C USDA004R_C10_BE403420Ld05P004E01E07R1_070.ab1   110 
  437    USDA004F_C10_BE403420Ld05P004E01E07F1_070.ab1   288 
  449  C USDA004R_C10_BE403420Ld05P004E01E07R1_070.ab1    90 
  453    USDA004F_C10_BE403420Ld05P004E01E07F1_070.ab1   304 
  469  C USDA004R_C10_BE403420Ld05P004E01E07R1_070.ab1    70 
  473    USDA004F_C10_BE403420Ld05P004E01E07F1_070.ab1   324 
Contig length: old 658, new 659

Contig length: old 659, new 659
New start: 0