No. words: 1063; after pruning: 1037


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 7.2 (1,1:403)  380  0.00 0.25 0.50  USDA004F_D10_BE403420Ld06P004E01E07F1_078.ab1        2   405 (117)  C USDA004R_D10_BE403420Ld06P004E01E07R1_078.ab1   (138)   403     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  194 nodes

 99 str. conn. components

Path
    1  C USDA004R_D10_BE403420Ld06P004E01E07R1_078.ab1   541 
  210    USDA004F_D10_BE403420Ld06P004E01E07F1_078.ab1    72 
  214  C USDA004R_D10_BE403420Ld06P004E01E07R1_078.ab1   328 
  274    USDA004F_D10_BE403420Ld06P004E01E07F1_078.ab1   136 
  278  C USDA004R_D10_BE403420Ld06P004E01E07R1_078.ab1   264 
  326    USDA004F_D10_BE403420Ld06P004E01E07F1_078.ab1   188 
  338  C USDA004R_D10_BE403420Ld06P004E01E07R1_078.ab1   204 
  362    USDA004F_D10_BE403420Ld06P004E01E07F1_078.ab1   224 
  378  C USDA004R_D10_BE403420Ld06P004E01E07R1_078.ab1   164 
  382    USDA004F_D10_BE403420Ld06P004E01E07F1_078.ab1   244 
  390  C USDA004R_D10_BE403420Ld06P004E01E07R1_078.ab1   152 
  402    USDA004F_D10_BE403420Ld06P004E01E07F1_078.ab1   264 
  406  C USDA004R_D10_BE403420Ld06P004E01E07R1_078.ab1   136 
  410    USDA004F_D10_BE403420Ld06P004E01E07F1_078.ab1   272 
  414  C USDA004R_D10_BE403420Ld06P004E01E07R1_078.ab1   128 
  426    USDA004F_D10_BE403420Ld06P004E01E07F1_078.ab1   288 
  450  C USDA004R_D10_BE403420Ld06P004E01E07R1_078.ab1    92 
  458    USDA004F_D10_BE403420Ld06P004E01E07F1_078.ab1   320 
  482  C USDA004R_D10_BE403420Ld06P004E01E07R1_078.ab1    60 
  486    USDA004F_D10_BE403420Ld06P004E01E07F1_078.ab1   348 
Contig length: old 659, new 660

Contig length: old 660, new 660
New start: 0