No. words: 1054; after pruning: 1028


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.6 (1,1:389)  367  0.00 0.00 0.77  USDA004F_E10_BE403420Ld07P004E01E07F1_071.ab1        1   392 (122)  C USDA004R_E10_BE403420Ld07P004E01E07R1_071.ab1   (151)   389     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  186 nodes

 95 str. conn. components

Path
    1  C USDA004R_E10_BE403420Ld07P004E01E07R1_071.ab1   540 
  231    USDA004F_E10_BE403420Ld07P004E01E07F1_071.ab1    80 
  243  C USDA004R_E10_BE403420Ld07P004E01E07R1_071.ab1   298 
  259    USDA004F_E10_BE403420Ld07P004E01E07F1_071.ab1   108 
  267  C USDA004R_E10_BE403420Ld07P004E01E07R1_071.ab1   274 
  275    USDA004F_E10_BE403420Ld07P004E01E07F1_071.ab1   124 
  279  C USDA004R_E10_BE403420Ld07P004E01E07R1_071.ab1   262 
  359    USDA004F_E10_BE403420Ld07P004E01E07F1_071.ab1   208 
  363  C USDA004R_E10_BE403420Ld07P004E01E07R1_071.ab1   178 
  367    USDA004F_E10_BE403420Ld07P004E01E07F1_071.ab1   216 
  415  C USDA004R_E10_BE403420Ld07P004E01E07R1_071.ab1   126 
  439    USDA004F_E10_BE403420Ld07P004E01E07F1_071.ab1   288 
  451  C USDA004R_E10_BE403420Ld07P004E01E07R1_071.ab1    90 
  459    USDA004F_E10_BE403420Ld07P004E01E07F1_071.ab1   308 
  471  C USDA004R_E10_BE403420Ld07P004E01E07R1_071.ab1    70 
  475    USDA004F_E10_BE403420Ld07P004E01E07F1_071.ab1   324 
Contig length: old 664, new 665

Contig length: old 665, new 665
New start: 0