No. words: 1061; after pruning: 1035


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:391)  377  0.00 0.00 0.26  USDA004F_F10_BE403420Ld08P004E01E07F1_079.ab1        1   392 (122)  C USDA004R_F10_BE403420Ld08P004E01E07R1_079.ab1   (156)   391     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  194 nodes

 99 str. conn. components

Path
    1  C USDA004R_F10_BE403420Ld08P004E01E07R1_079.ab1   547 
  236    USDA004F_F10_BE403420Ld08P004E01E07F1_079.ab1    80 
  244  C USDA004R_F10_BE403420Ld08P004E01E07R1_079.ab1   304 
  280    USDA004F_F10_BE403420Ld08P004E01E07F1_079.ab1   124 
  284  C USDA004R_F10_BE403420Ld08P004E01E07R1_079.ab1   264 
  336    USDA004F_F10_BE403420Ld08P004E01E07F1_079.ab1   180 
  356  C USDA004R_F10_BE403420Ld08P004E01E07R1_079.ab1   192 
  368    USDA004F_F10_BE403420Ld08P004E01E07F1_079.ab1   212 
  404  C USDA004R_F10_BE403420Ld08P004E01E07R1_079.ab1   144 
  416    USDA004F_F10_BE403420Ld08P004E01E07F1_079.ab1   260 
  420  C USDA004R_F10_BE403420Ld08P004E01E07R1_079.ab1   128 
  432    USDA004F_F10_BE403420Ld08P004E01E07F1_079.ab1   276 
  456  C USDA004R_F10_BE403420Ld08P004E01E07R1_079.ab1    92 
  464    USDA004F_F10_BE403420Ld08P004E01E07F1_079.ab1   308 
  476  C USDA004R_F10_BE403420Ld08P004E01E07R1_079.ab1    72 
  480    USDA004F_F10_BE403420Ld08P004E01E07F1_079.ab1   324 
  524  C USDA004R_F10_BE403420Ld08P004E01E07R1_079.ab1    24 
  528    USDA004F_F10_BE403420Ld08P004E01E07F1_079.ab1   372 
Contig length: old 669, new 670

Contig length: old 670, new 670
New start: 0