No. words: 1053; after pruning: 1027


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:383)  369  0.00 0.00 0.26  USDA004F_G10_BE403420Ld09P004E01E07F1_072.ab1        1   384 (130)  C USDA004R_G10_BE403420Ld09P004E01E07R1_072.ab1   (156)   383     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1  C USDA004R_G10_BE403420Ld09P004E01E07R1_072.ab1   539 
  236    USDA004F_G10_BE403420Ld09P004E01E07F1_072.ab1    80 
  244  C USDA004R_G10_BE403420Ld09P004E01E07R1_072.ab1   296 
  252    USDA004F_G10_BE403420Ld09P004E01E07F1_072.ab1    96 
  256  C USDA004R_G10_BE403420Ld09P004E01E07R1_072.ab1   284 
  268    USDA004F_G10_BE403420Ld09P004E01E07F1_072.ab1   112 
  272  C USDA004R_G10_BE403420Ld09P004E01E07R1_072.ab1   268 
  280    USDA004F_G10_BE403420Ld09P004E01E07F1_072.ab1   124 
  284  C USDA004R_G10_BE403420Ld09P004E01E07R1_072.ab1   256 
  344    USDA004F_G10_BE403420Ld09P004E01E07F1_072.ab1   188 
  356  C USDA004R_G10_BE403420Ld09P004E01E07R1_072.ab1   184 
  372    USDA004F_G10_BE403420Ld09P004E01E07F1_072.ab1   216 
  420  C USDA004R_G10_BE403420Ld09P004E01E07R1_072.ab1   120 
  424    USDA004F_G10_BE403420Ld09P004E01E07F1_072.ab1   268 
  440  C USDA004R_G10_BE403420Ld09P004E01E07R1_072.ab1   100 
  444    USDA004F_G10_BE403420Ld09P004E01E07F1_072.ab1   288 
  452  C USDA004R_G10_BE403420Ld09P004E01E07R1_072.ab1    88 
  464    USDA004F_G10_BE403420Ld09P004E01E07F1_072.ab1   308 
  468  C USDA004R_G10_BE403420Ld09P004E01E07R1_072.ab1    72 
  472    USDA004F_G10_BE403420Ld09P004E01E07F1_072.ab1   316 
Contig length: old 669, new 670

Contig length: old 670, new 670
New start: 0