No. words: 1055; after pruning: 1029


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:390)  372  0.00 0.00 0.51  USDA004F_H10_BE403420Ld10P004E01E07F1_080.ab1        1   392 (117)  C USDA004R_H10_BE403420Ld10P004E01E07R1_080.ab1   (156)   390     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1  C USDA004R_H10_BE403420Ld10P004E01E07R1_080.ab1   546 
  280    USDA004F_H10_BE403420Ld10P004E01E07F1_080.ab1   124 
  284  C USDA004R_H10_BE403420Ld10P004E01E07R1_080.ab1   263 
  340    USDA004F_H10_BE403420Ld10P004E01E07F1_080.ab1   184 
  368  C USDA004R_H10_BE403420Ld10P004E01E07R1_080.ab1   179 
  372    USDA004F_H10_BE403420Ld10P004E01E07F1_080.ab1   216 
  404  C USDA004R_H10_BE403420Ld10P004E01E07R1_080.ab1   143 
  408    USDA004F_H10_BE403420Ld10P004E01E07F1_080.ab1   252 
  420  C USDA004R_H10_BE403420Ld10P004E01E07R1_080.ab1   127 
  432    USDA004F_H10_BE403420Ld10P004E01E07F1_080.ab1   276 
  456  C USDA004R_H10_BE403420Ld10P004E01E07R1_080.ab1    91 
  460    USDA004F_H10_BE403420Ld10P004E01E07F1_080.ab1   304 
Contig length: old 664, new 665

Contig length: old 665, new 665
New start: 0