No. words: 1422; after pruning: 1396


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.9 (1,1:1188)  211  0.86 0.00 0.43  USDA013F_G06_BE403631Ld09P032A05P032A11F1_036.ab1      361   593 (0)  C USDA013R_G06_BE403631Ld09P032A05P032A11R1_036.ab1   (0)   829   598 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  108 nodes

 56 str. conn. components

Path
    1    USDA013F_G06_BE403631Ld09P032A05P032A11F1_036.ab1     1 
  432  C USDA013R_G06_BE403631Ld09P032A05P032A11R1_036.ab1   758 
  436    USDA013F_G06_BE403631Ld09P032A05P032A11F1_036.ab1   436 
  448  C USDA013R_G06_BE403631Ld09P032A05P032A11R1_036.ab1   742 
  468    USDA013F_G06_BE403631Ld09P032A05P032A11F1_036.ab1   468 
  481  C USDA013R_G06_BE403631Ld09P032A05P032A11R1_036.ab1   709 
Contig length: old 1189, new 1189

Contig length: old 1189, new 1189
New start: 0 
S Change at: 474; seg lengths: entry 1, contig 1