No. words: 1356; after pruning: 1330


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.3 (1,1:1190)  156  1.21 0.00 0.00  USDA013F_H06_BE403631Ld10P032A05P032A11F1_034.ab1      288   452 (0)  C USDA013R_H06_BE403631Ld10P032A05P032A11R1_034.ab1   (0)   904   740 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  82 nodes

 43 str. conn. components

Path
    1    USDA013F_H06_BE403631Ld10P032A05P032A11F1_034.ab1     1 
  355  C USDA013R_H06_BE403631Ld10P032A05P032A11R1_034.ab1   837 
  359    USDA013F_H06_BE403631Ld10P032A05P032A11F1_034.ab1   359 
  389  C USDA013R_H06_BE403631Ld10P032A05P032A11R1_034.ab1   803 
  393    USDA013F_H06_BE403631Ld10P032A05P032A11F1_034.ab1   393 
  401  C USDA013R_H06_BE403631Ld10P032A05P032A11R1_034.ab1   791 
  405    USDA013F_H06_BE403631Ld10P032A05P032A11F1_034.ab1   405 
  409  C USDA013R_H06_BE403631Ld10P032A05P032A11R1_034.ab1   783 
  413    USDA013F_H06_BE403631Ld10P032A05P032A11F1_034.ab1   413 
  425  C USDA013R_H06_BE403631Ld10P032A05P032A11R1_034.ab1   767 
Contig length: old 1191, new 1191

Contig length: old 1191, new 1191
New start: 0