No. words: 977; after pruning: 951


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 5.0 (1,1:339)  329  0.59 0.00 0.00  USDA003F_G10_BE403644Ld09P004H04H10F1_072.ab1        1   338 (165)  C USDA003R_G10_BE403644Ld09P004H04H10R1_072.ab1   (134)   340     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  164 nodes

 84 str. conn. components

Path
    1  C USDA003R_G10_BE403644Ld09P004H04H10R1_072.ab1   474 
  138    USDA003F_G10_BE403644Ld09P004H04H10F1_072.ab1     4 
  142  C USDA003R_G10_BE403644Ld09P004H04H10R1_072.ab1   333 
  166    USDA003F_G10_BE403644Ld09P004H04H10F1_072.ab1    32 
  250  C USDA003R_G10_BE403644Ld09P004H04H10R1_072.ab1   225 
  254    USDA003F_G10_BE403644Ld09P004H04H10F1_072.ab1   120 
  282  C USDA003R_G10_BE403644Ld09P004H04H10R1_072.ab1   193 
  290    USDA003F_G10_BE403644Ld09P004H04H10F1_072.ab1   156 
  359  C USDA003R_G10_BE403644Ld09P004H04H10R1_072.ab1   116 
  363    USDA003F_G10_BE403644Ld09P004H04H10F1_072.ab1   229 
  379  C USDA003R_G10_BE403644Ld09P004H04H10R1_072.ab1    96 
  383    USDA003F_G10_BE403644Ld09P004H04H10F1_072.ab1   249 
Contig length: old 637, new 637

Contig length: old 637, new 637
New start: 0