No. words: 915; after pruning: 889


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:422)  405  0.00 0.24 0.00  USDA003F_C05_BE405749As01P004G03G09F1_034.ab1        1   423 (34)  C USDA003R_C05_BE405749As01P004G03G09R1_034.ab1   (34)   424     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  210 nodes

 107 str. conn. components

Path
    1  C USDA003R_C05_BE405749As01P004G03G09R1_034.ab1   458 
   80    USDA003F_C05_BE405749As01P004G03G09F1_034.ab1    45 
   84  C USDA003R_C05_BE405749As01P004G03G09R1_034.ab1   375 
  128    USDA003F_C05_BE405749As01P004G03G09F1_034.ab1    93 
  148  C USDA003R_C05_BE405749As01P004G03G09R1_034.ab1   311 
  152    USDA003F_C05_BE405749As01P004G03G09F1_034.ab1   117 
Contig length: old 492, new 492

Contig length: old 492, new 492
New start: 0