No. words: 883; after pruning: 857


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.1 (1,1:408)  395  0.00 0.00 0.00  USDA003F_E05_BE405749At01P004G03G09F1_035.ab1        1   409 (34)  C USDA003R_E05_BE405749At01P004G03G09R1_035.ab1   (31)   409     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  206 nodes

 105 str. conn. components

Path
    1  C USDA003R_E05_BE405749At01P004G03G09R1_035.ab1   440 
  111    USDA003F_E05_BE405749At01P004G03G09F1_035.ab1    80 
  139  C USDA003R_E05_BE405749At01P004G03G09R1_035.ab1   302 
  143    USDA003F_E05_BE405749At01P004G03G09F1_035.ab1   112 
  167  C USDA003R_E05_BE405749At01P004G03G09R1_035.ab1   274 
  171    USDA003F_E05_BE405749At01P004G03G09F1_035.ab1   140 
  191  C USDA003R_E05_BE405749At01P004G03G09R1_035.ab1   250 
  195    USDA003F_E05_BE405749At01P004G03G09F1_035.ab1   164 
  307  C USDA003R_E05_BE405749At01P004G03G09R1_035.ab1   134 
  331    USDA003F_E05_BE405749At01P004G03G09F1_035.ab1   300 
  403  C USDA003R_E05_BE405749At01P004G03G09R1_035.ab1    38 
  407    USDA003F_E05_BE405749At01P004G03G09F1_035.ab1   376 
Contig length: old 474, new 474

Contig length: old 474, new 474
New start: 0