No. words: 1171; after pruning: 1145


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.2 (1,1:454)  426  0.22 0.00 0.44  USDA003F_G05_BE405749Ld01P004G03G09F1_036.ab1        1   455 (123)  C USDA003R_G05_BE405749Ld01P004G03G09R1_036.ab1   (140)   453     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1  C USDA003R_G05_BE405749Ld01P004G03G09R1_036.ab1   593 
  209    USDA003F_G05_BE405749Ld01P004G03G09F1_036.ab1    70 
  217  C USDA003R_G05_BE405749Ld01P004G03G09R1_036.ab1   377 
  225    USDA003F_G05_BE405749Ld01P004G03G09F1_036.ab1    86 
  233  C USDA003R_G05_BE405749Ld01P004G03G09R1_036.ab1   361 
  237    USDA003F_G05_BE405749Ld01P004G03G09F1_036.ab1    98 
  257  C USDA003R_G05_BE405749Ld01P004G03G09R1_036.ab1   337 
  269    USDA003F_G05_BE405749Ld01P004G03G09F1_036.ab1   130 
  281  C USDA003R_G05_BE405749Ld01P004G03G09R1_036.ab1   313 
  289    USDA003F_G05_BE405749Ld01P004G03G09F1_036.ab1   150 
  341  C USDA003R_G05_BE405749Ld01P004G03G09R1_036.ab1   253 
  345    USDA003F_G05_BE405749Ld01P004G03G09F1_036.ab1   206 
  365  C USDA003R_G05_BE405749Ld01P004G03G09R1_036.ab1   229 
  373    USDA003F_G05_BE405749Ld01P004G03G09F1_036.ab1   234 
  385  C USDA003R_G05_BE405749Ld01P004G03G09R1_036.ab1   209 
  393    USDA003F_G05_BE405749Ld01P004G03G09F1_036.ab1   254 
  429  C USDA003R_G05_BE405749Ld01P004G03G09R1_036.ab1   165 
  433    USDA003F_G05_BE405749Ld01P004G03G09F1_036.ab1   294 
  497  C USDA003R_G05_BE405749Ld01P004G03G09R1_036.ab1    97 
  505    USDA003F_G05_BE405749Ld01P004G03G09F1_036.ab1   366 
  541  C USDA003R_G05_BE405749Ld01P004G03G09R1_036.ab1    53 
  545    USDA003F_G05_BE405749Ld01P004G03G09F1_036.ab1   406 
Contig length: old 716, new 717

Contig length: old 717, new 717
New start: 0