No. words: 1184; after pruning: 1158


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 7.5 (1,1:466)  427  1.29 0.21 0.21  USDA003F_H05_BE405749Ld02P004G03G09F1_044.ab1        1   466 (113)  C USDA003R_H05_BE405749Ld02P004G03G09R1_044.ab1   (138)   467     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1  C USDA003R_H05_BE405749Ld02P004G03G09R1_044.ab1   605 
  268    USDA003F_H05_BE405749Ld02P004G03G09F1_044.ab1   130 
  272  C USDA003R_H05_BE405749Ld02P004G03G09R1_044.ab1   334 
  288    USDA003F_H05_BE405749Ld02P004G03G09F1_044.ab1   150 
  296  C USDA003R_H05_BE405749Ld02P004G03G09R1_044.ab1   310 
  320    USDA003F_H05_BE405749Ld02P004G03G09F1_044.ab1   182 
  324  C USDA003R_H05_BE405749Ld02P004G03G09R1_044.ab1   282 
  400    USDA003F_H05_BE405749Ld02P004G03G09F1_044.ab1   262 
  428  C USDA003R_H05_BE405749Ld02P004G03G09R1_044.ab1   178 
  440    USDA003F_H05_BE405749Ld02P004G03G09F1_044.ab1   302 
  520  C USDA003R_H05_BE405749Ld02P004G03G09R1_044.ab1    86 
  528    USDA003F_H05_BE405749Ld02P004G03G09F1_044.ab1   390 
Contig length: old 717, new 717

Contig length: old 717, new 717
New start: 0