No. words: 1162; after pruning: 1136


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:451)  418  0.44 0.44 0.22  USDA003F_A06_BE405749Ld03P004G03G09F1_037.ab1        1   452 (121)  C USDA003R_A06_BE405749Ld03P004G03G09R1_037.ab1   (136)   453     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C USDA003R_A06_BE405749Ld03P004G03G09R1_037.ab1   589 
  211    USDA003F_A06_BE405749Ld03P004G03G09F1_037.ab1    73 
  215  C USDA003R_A06_BE405749Ld03P004G03G09R1_037.ab1   375 
  223    USDA003F_A06_BE405749Ld03P004G03G09F1_037.ab1    85 
  227  C USDA003R_A06_BE405749Ld03P004G03G09R1_037.ab1   363 
  251    USDA003F_A06_BE405749Ld03P004G03G09F1_037.ab1   113 
  263  C USDA003R_A06_BE405749Ld03P004G03G09R1_037.ab1   327 
  267    USDA003F_A06_BE405749Ld03P004G03G09F1_037.ab1   129 
  271  C USDA003R_A06_BE405749Ld03P004G03G09R1_037.ab1   319 
  275    USDA003F_A06_BE405749Ld03P004G03G09F1_037.ab1   137 
  363  C USDA003R_A06_BE405749Ld03P004G03G09R1_037.ab1   227 
  367    USDA003F_A06_BE405749Ld03P004G03G09F1_037.ab1   229 
Contig length: old 710, new 711

Contig length: old 711, new 711
New start: 0