No. words: 1164; after pruning: 1138


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:450)  418  0.00 0.22 0.66  USDA003F_B06_BE405749Ld04P004G03G09F1_045.ab1        1   453 (122)  C USDA003R_B06_BE405749Ld04P004G03G09R1_045.ab1   (138)   451     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C USDA003R_B06_BE405749Ld04P004G03G09R1_045.ab1   589 
  205    USDA003F_B06_BE405749Ld04P004G03G09F1_045.ab1    66 
  209  C USDA003R_B06_BE405749Ld04P004G03G09R1_045.ab1   381 
  221    USDA003F_B06_BE405749Ld04P004G03G09F1_045.ab1    82 
  249  C USDA003R_B06_BE405749Ld04P004G03G09R1_045.ab1   341 
  265    USDA003F_B06_BE405749Ld04P004G03G09F1_045.ab1   126 
  269  C USDA003R_B06_BE405749Ld04P004G03G09R1_045.ab1   321 
  285    USDA003F_B06_BE405749Ld04P004G03G09F1_045.ab1   146 
  297  C USDA003R_B06_BE405749Ld04P004G03G09R1_045.ab1   293 
  313    USDA003F_B06_BE405749Ld04P004G03G09F1_045.ab1   174 
  321  C USDA003R_B06_BE405749Ld04P004G03G09R1_045.ab1   269 
  329    USDA003F_B06_BE405749Ld04P004G03G09F1_045.ab1   190 
  341  C USDA003R_B06_BE405749Ld04P004G03G09R1_045.ab1   249 
  389    USDA003F_B06_BE405749Ld04P004G03G09F1_045.ab1   250 
  548  C USDA003R_B06_BE405749Ld04P004G03G09R1_045.ab1    43 
  552    USDA003F_B06_BE405749Ld04P004G03G09F1_045.ab1   413 
Contig length: old 713, new 714

Contig length: old 714, new 714
New start: 0