No. words: 1163; after pruning: 1137


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.2 (1,1:450)  418  0.00 0.44 0.44  USDA003F_C06_BE405749Ld05P004G03G09F1_038.ab1        1   452 (123)  C USDA003R_C06_BE405749Ld05P004G03G09R1_038.ab1   (136)   452     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C USDA003R_C06_BE405749Ld05P004G03G09R1_038.ab1   588 
  202    USDA003F_C06_BE405749Ld05P004G03G09F1_038.ab1    64 
  206  C USDA003R_C06_BE405749Ld05P004G03G09R1_038.ab1   383 
  218    USDA003F_C06_BE405749Ld05P004G03G09F1_038.ab1    80 
  234  C USDA003R_C06_BE405749Ld05P004G03G09R1_038.ab1   355 
  282    USDA003F_C06_BE405749Ld05P004G03G09F1_038.ab1   144 
  294  C USDA003R_C06_BE405749Ld05P004G03G09R1_038.ab1   295 
  306    USDA003F_C06_BE405749Ld05P004G03G09F1_038.ab1   168 
  402  C USDA003R_C06_BE405749Ld05P004G03G09R1_038.ab1   187 
  414    USDA003F_C06_BE405749Ld05P004G03G09F1_038.ab1   276 
  546  C USDA003R_C06_BE405749Ld05P004G03G09R1_038.ab1    44 
  550    USDA003F_C06_BE405749Ld05P004G03G09F1_038.ab1   412 
Contig length: old 712, new 713

Contig length: old 713, new 713
New start: 0