No. words: 1164; after pruning: 1138


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.0 (1,1:452)  429  0.00 0.22 0.22  USDA003F_D06_BE405749Ld06P004G03G09F1_046.ab1        1   453 (122)  C USDA003R_D06_BE405749Ld06P004G03G09R1_046.ab1   (136)   453     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C USDA003R_D06_BE405749Ld06P004G03G09R1_046.ab1   589 
  206    USDA003F_D06_BE405749Ld06P004G03G09F1_046.ab1    69 
  210  C USDA003R_D06_BE405749Ld06P004G03G09R1_046.ab1   380 
  222    USDA003F_D06_BE405749Ld06P004G03G09F1_046.ab1    85 
  226  C USDA003R_D06_BE405749Ld06P004G03G09R1_046.ab1   364 
  262    USDA003F_D06_BE405749Ld06P004G03G09F1_046.ab1   125 
  270  C USDA003R_D06_BE405749Ld06P004G03G09R1_046.ab1   320 
  282    USDA003F_D06_BE405749Ld06P004G03G09F1_046.ab1   145 
  290  C USDA003R_D06_BE405749Ld06P004G03G09R1_046.ab1   300 
  302    USDA003F_D06_BE405749Ld06P004G03G09F1_046.ab1   165 
  338  C USDA003R_D06_BE405749Ld06P004G03G09R1_046.ab1   252 
  342    USDA003F_D06_BE405749Ld06P004G03G09F1_046.ab1   205 
  358  C USDA003R_D06_BE405749Ld06P004G03G09R1_046.ab1   232 
  386    USDA003F_D06_BE405749Ld06P004G03G09F1_046.ab1   249 
  410  C USDA003R_D06_BE405749Ld06P004G03G09R1_046.ab1   180 
  414    USDA003F_D06_BE405749Ld06P004G03G09F1_046.ab1   277 
  426  C USDA003R_D06_BE405749Ld06P004G03G09R1_046.ab1   164 
  430    USDA003F_D06_BE405749Ld06P004G03G09F1_046.ab1   293 
  546  C USDA003R_D06_BE405749Ld06P004G03G09R1_046.ab1    44 
  550    USDA003F_D06_BE405749Ld06P004G03G09F1_046.ab1   413 
Contig length: old 711, new 712

Contig length: old 712, new 712
New start: 0