No. words: 1125; after pruning: 1099


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.7 (1,1:412)  379  0.97 0.00 0.24  USDA003F_E06_BE405749Ld07P004G03G09F1_039.ab1        1   413 (123)  C USDA003R_E06_BE405749Ld07P004G03G09R1_039.ab1   (177)   412     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  198 nodes

 101 str. conn. components

Path
    1  C USDA003R_E06_BE405749Ld07P004G03G09R1_039.ab1   589 
  223    USDA003F_E06_BE405749Ld07P004G03G09F1_039.ab1    46 
  227  C USDA003R_E06_BE405749Ld07P004G03G09R1_039.ab1   363 
  251    USDA003F_E06_BE405749Ld07P004G03G09F1_039.ab1    74 
  255  C USDA003R_E06_BE405749Ld07P004G03G09R1_039.ab1   335 
  259    USDA003F_E06_BE405749Ld07P004G03G09F1_039.ab1    82 
  291  C USDA003R_E06_BE405749Ld07P004G03G09R1_039.ab1   299 
  295    USDA003F_E06_BE405749Ld07P004G03G09F1_039.ab1   118 
  303  C USDA003R_E06_BE405749Ld07P004G03G09R1_039.ab1   287 
  311    USDA003F_E06_BE405749Ld07P004G03G09F1_039.ab1   134 
  327  C USDA003R_E06_BE405749Ld07P004G03G09R1_039.ab1   263 
  371    USDA003F_E06_BE405749Ld07P004G03G09F1_039.ab1   194 
  379  C USDA003R_E06_BE405749Ld07P004G03G09R1_039.ab1   211 
  399    USDA003F_E06_BE405749Ld07P004G03G09F1_039.ab1   222 
  407  C USDA003R_E06_BE405749Ld07P004G03G09R1_039.ab1   183 
  415    USDA003F_E06_BE405749Ld07P004G03G09F1_039.ab1   238 
  419  C USDA003R_E06_BE405749Ld07P004G03G09R1_039.ab1   171 
  435    USDA003F_E06_BE405749Ld07P004G03G09F1_039.ab1   258 
  439  C USDA003R_E06_BE405749Ld07P004G03G09R1_039.ab1   151 
  463    USDA003F_E06_BE405749Ld07P004G03G09F1_039.ab1   286 
  471  C USDA003R_E06_BE405749Ld07P004G03G09R1_039.ab1   119 
  479    USDA003F_E06_BE405749Ld07P004G03G09F1_039.ab1   302 
  523  C USDA003R_E06_BE405749Ld07P004G03G09R1_039.ab1    67 
  527    USDA003F_E06_BE405749Ld07P004G03G09F1_039.ab1   350 
  547  C USDA003R_E06_BE405749Ld07P004G03G09R1_039.ab1    43 
  551    USDA003F_E06_BE405749Ld07P004G03G09F1_039.ab1   374 
Contig length: old 712, new 713

Contig length: old 713, new 713
New start: 0