No. words: 1154; after pruning: 1128


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.6 (1,1:447)  423  0.00 0.22 0.45  USDA003F_G06_BE405749Ld09P004G03G09F1_040.ab1        1   449 (148)  C USDA003R_G06_BE405749Ld09P004G03G09R1_040.ab1   (109)   448     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C USDA003R_G06_BE405749Ld09P004G03G09R1_040.ab1   557 
  183    USDA003F_G06_BE405749Ld09P004G03G09F1_040.ab1    73 
  187  C USDA003R_G06_BE405749Ld09P004G03G09R1_040.ab1   371 
  239    USDA003F_G06_BE405749Ld09P004G03G09F1_040.ab1   129 
  247  C USDA003R_G06_BE405749Ld09P004G03G09R1_040.ab1   311 
  259    USDA003F_G06_BE405749Ld09P004G03G09F1_040.ab1   149 
  267  C USDA003R_G06_BE405749Ld09P004G03G09R1_040.ab1   291 
  279    USDA003F_G06_BE405749Ld09P004G03G09F1_040.ab1   169 
  299  C USDA003R_G06_BE405749Ld09P004G03G09R1_040.ab1   259 
  303    USDA003F_G06_BE405749Ld09P004G03G09F1_040.ab1   193 
  327  C USDA003R_G06_BE405749Ld09P004G03G09R1_040.ab1   231 
  339    USDA003F_G06_BE405749Ld09P004G03G09F1_040.ab1   229 
  347  C USDA003R_G06_BE405749Ld09P004G03G09R1_040.ab1   211 
  367    USDA003F_G06_BE405749Ld09P004G03G09F1_040.ab1   257 
  391  C USDA003R_G06_BE405749Ld09P004G03G09R1_040.ab1   167 
  395    USDA003F_G06_BE405749Ld09P004G03G09F1_040.ab1   285 
  423  C USDA003R_G06_BE405749Ld09P004G03G09R1_040.ab1   135 
  435    USDA003F_G06_BE405749Ld09P004G03G09F1_040.ab1   325 
  463  C USDA003R_G06_BE405749Ld09P004G03G09R1_040.ab1    95 
  467    USDA003F_G06_BE405749Ld09P004G03G09F1_040.ab1   357 
  515  C USDA003R_G06_BE405749Ld09P004G03G09R1_040.ab1    43 
  519    USDA003F_G06_BE405749Ld09P004G03G09F1_040.ab1   409 
  527  C USDA003R_G06_BE405749Ld09P004G03G09R1_040.ab1    31 
  531    USDA003F_G06_BE405749Ld09P004G03G09F1_040.ab1   421 
Contig length: old 706, new 707

Contig length: old 707, new 707
New start: 0