No. words: 1178; after pruning: 1152


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 7.4 (1,1:458)  419  0.00 0.44 0.44  USDA003F_H06_BE405749Ld10P004G03G09F1_048.ab1        1   453 (122)  C USDA003R_H06_BE405749Ld10P004G03G09R1_048.ab1   (143)   460     8 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C USDA003R_H06_BE405749Ld10P004G03G09R1_048.ab1   603 
  222    USDA003F_H06_BE405749Ld10P004G03G09F1_048.ab1    77 
  234  C USDA003R_H06_BE405749Ld10P004G03G09R1_048.ab1   370 
  242    USDA003F_H06_BE405749Ld10P004G03G09F1_048.ab1    97 
  262  C USDA003R_H06_BE405749Ld10P004G03G09R1_048.ab1   342 
  266    USDA003F_H06_BE405749Ld10P004G03G09F1_048.ab1   121 
  270  C USDA003R_H06_BE405749Ld10P004G03G09R1_048.ab1   334 
  274    USDA003F_H06_BE405749Ld10P004G03G09F1_048.ab1   129 
  282  C USDA003R_H06_BE405749Ld10P004G03G09R1_048.ab1   322 
  290    USDA003F_H06_BE405749Ld10P004G03G09F1_048.ab1   145 
  302  C USDA003R_H06_BE405749Ld10P004G03G09R1_048.ab1   302 
  318    USDA003F_H06_BE405749Ld10P004G03G09F1_048.ab1   173 
  334  C USDA003R_H06_BE405749Ld10P004G03G09R1_048.ab1   270 
  350    USDA003F_H06_BE405749Ld10P004G03G09F1_048.ab1   205 
  366  C USDA003R_H06_BE405749Ld10P004G03G09R1_048.ab1   238 
  378    USDA003F_H06_BE405749Ld10P004G03G09F1_048.ab1   233 
  386  C USDA003R_H06_BE405749Ld10P004G03G09R1_048.ab1   218 
  394    USDA003F_H06_BE405749Ld10P004G03G09F1_048.ab1   249 
  498  C USDA003R_H06_BE405749Ld10P004G03G09R1_048.ab1   106 
  506    USDA003F_H06_BE405749Ld10P004G03G09F1_048.ab1   361 
  554  C USDA003R_H06_BE405749Ld10P004G03G09R1_048.ab1    50 
  558    USDA003F_H06_BE405749Ld10P004G03G09F1_048.ab1   413 
Contig length: old 719, new 720

Contig length: old 720, new 720
New start: 0