No. words: 1591; after pruning: 1551


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 15.2 (1,1:780)  752  0.26 0.26 0.00  USDA013F_D01_BE405834As02P032A01P032A07F1_009.ab1        7   779 (0)  C USDA013R_D01_BE405834As02P032A01P032A07R1_009.ab1   (36)   776     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1  C USDA013R_D01_BE405834As02P032A01P032A07R1_009.ab1   812 
   61    USDA013F_D01_BE405834As02P032A01P032A07F1_009.ab1    29 
   97  C USDA013R_D01_BE405834As02P032A01P032A07R1_009.ab1   716 
  101    USDA013F_D01_BE405834As02P032A01P032A07F1_009.ab1    69 
  278  C USDA013R_D01_BE405834As02P032A01P032A07R1_009.ab1   535 
  286    USDA013F_D01_BE405834As02P032A01P032A07F1_009.ab1   254 
  318  C USDA013R_D01_BE405834As02P032A01P032A07R1_009.ab1   495 
  801    USDA013F_D01_BE405834As02P032A01P032A07F1_009.ab1   769 
  805  C USDA013R_D01_BE405834As02P032A01P032A07R1_009.ab1     8 
Contig length: old 812, new 812

Contig length: old 812, new 812
New start: 0