No. words: 1427; after pruning: 1387


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 12.2 (1,1:770)  604  0.48 0.16 0.00  USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1        3   621 (0)  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   (36)   770   151 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   806 
   61    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1    26 
   75  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   732 
   83    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1    48 
  135  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   672 
  139    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1   104 
  205  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   602 
  209    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1   174 
  233  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   574 
  249    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1   214 
  257  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   550 
  281    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1   246 
  285  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   522 
  337    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1   302 
  349  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   458 
  357    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1   322 
  361  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   446 
  373    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1   338 
  385  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   422 
  393    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1   358 
  401  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   406 
  405    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1   370 
  417  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   390 
  421    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1   386 
  433  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   374 
  441    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1   406 
  445  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   362 
  453    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1   418 
  461  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   346 
  485    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1   450 
  493  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   314 
  525    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1   490 
  529  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   278 
  565    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1   530 
  581  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   226 
  609    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1   574 
  613  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   194 
  617    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1   582 
  621  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   186 
  630    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1   595 
  638  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   169 
  646    USDA013F_E01_BE405834At01P032A01P032A07F1_007.ab1   611 
  650  C USDA013R_E01_BE405834At01P032A01P032A07R1_007.ab1   157 
Contig length: old 806, new 806

Contig length: old 806, new 806
New start: 0