No. words: 1544; after pruning: 1462


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 13.2 (1,1:772)  714  0.82 0.14 0.00  USDA013F_F01_BE405834At02P032A01P032A07F1_005.ab1        6   740 (0)  C USDA013R_F01_BE405834At02P032A01P032A07R1_005.ab1   (35)   769    34 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  346 nodes

 175 str. conn. components

Path
    1  C USDA013R_F01_BE405834At02P032A01P032A07R1_005.ab1   804 
   60    USDA013F_F01_BE405834At02P032A01P032A07F1_005.ab1    29 
  145  C USDA013R_F01_BE405834At02P032A01P032A07R1_005.ab1   660 
  149    USDA013F_F01_BE405834At02P032A01P032A07F1_005.ab1   118 
  157  C USDA013R_F01_BE405834At02P032A01P032A07R1_005.ab1   648 
  161    USDA013F_F01_BE405834At02P032A01P032A07F1_005.ab1   130 
  309  C USDA013R_F01_BE405834At02P032A01P032A07R1_005.ab1   496 
Contig length: old 804, new 804

Contig length: old 804, new 804
New start: 0