No. words: 1752; after pruning: 1726


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 15.4 (1,1:810)  792  0.00 0.00 0.25  USDA013F_G01_BE405834Ld01P032A01P032A07F1_003.ab1        4   812 (10)  C USDA013R_G01_BE405834Ld01P032A01P032A07R1_003.ab1   (123)   807     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  402 nodes

 203 str. conn. components

Path
    1  C USDA013R_G01_BE405834Ld01P032A01P032A07R1_003.ab1   930 
  127    USDA013F_G01_BE405834Ld01P032A01P032A07F1_003.ab1     7 
  135  C USDA013R_G01_BE405834Ld01P032A01P032A07R1_003.ab1   796 
  139    USDA013F_G01_BE405834Ld01P032A01P032A07F1_003.ab1    19 
  163  C USDA013R_G01_BE405834Ld01P032A01P032A07R1_003.ab1   768 
  171    USDA013F_G01_BE405834Ld01P032A01P032A07F1_003.ab1    51 
  631  C USDA013R_G01_BE405834Ld01P032A01P032A07R1_003.ab1   300 
  639    USDA013F_G01_BE405834Ld01P032A01P032A07F1_003.ab1   519 
  655  C USDA013R_G01_BE405834Ld01P032A01P032A07R1_003.ab1   276 
  915    USDA013F_G01_BE405834Ld01P032A01P032A07F1_003.ab1   795 
Contig length: old 941, new 942

Contig length: old 942, new 942
New start: 0