No. words: 1163; after pruning: 1123


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 5.8 (1,1:879)  264  0.37 0.00 0.00  USDA013F_H01_BE405834Ld02P032A01P032A07F1_001.ab1      610   877 (15)  C USDA013R_H01_BE405834Ld02P032A01P032A07R1_001.ab1   (0)   271     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  134 nodes

 69 str. conn. components

Path
    1    USDA013F_H01_BE405834Ld02P032A01P032A07F1_001.ab1     1 
  649  C USDA013R_H01_BE405834Ld02P032A01P032A07R1_001.ab1   232 
  661    USDA013F_H01_BE405834Ld02P032A01P032A07F1_001.ab1   661 
  665  C USDA013R_H01_BE405834Ld02P032A01P032A07R1_001.ab1   216 
  673    USDA013F_H01_BE405834Ld02P032A01P032A07F1_001.ab1   673 
  677  C USDA013R_H01_BE405834Ld02P032A01P032A07R1_001.ab1   204 
  685    USDA013F_H01_BE405834Ld02P032A01P032A07F1_001.ab1   685 
  709  C USDA013R_H01_BE405834Ld02P032A01P032A07R1_001.ab1   172 
  737    USDA013F_H01_BE405834Ld02P032A01P032A07F1_001.ab1   737 
  741  C USDA013R_H01_BE405834Ld02P032A01P032A07R1_001.ab1   140 
  873    USDA013F_H01_BE405834Ld02P032A01P032A07F1_001.ab1   873 
Contig length: old 892, new 892

Contig length: old 892, new 892
New start: 0