No. words: 1415; after pruning: 1375


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:812)  530  0.91 0.00 0.18  USDA013F_A02_BE405834Ld03P032A01P032A07F1_016.ab1        1   551 (0)  C USDA013R_A02_BE405834Ld03P032A01P032A07R1_016.ab1   (52)   812   263 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C USDA013R_A02_BE405834Ld03P032A01P032A07R1_016.ab1   864 
   57    USDA013F_A02_BE405834Ld03P032A01P032A07F1_016.ab1     5 
   73  C USDA013R_A02_BE405834Ld03P032A01P032A07R1_016.ab1   792 
   77    USDA013F_A02_BE405834Ld03P032A01P032A07F1_016.ab1    25 
   94  C USDA013R_A02_BE405834Ld03P032A01P032A07R1_016.ab1   771 
  109    USDA013F_A02_BE405834Ld03P032A01P032A07F1_016.ab1    57 
  193  C USDA013R_A02_BE405834Ld03P032A01P032A07R1_016.ab1   672 
  197    USDA013F_A02_BE405834Ld03P032A01P032A07F1_016.ab1   145 
  233  C USDA013R_A02_BE405834Ld03P032A01P032A07R1_016.ab1   632 
  241    USDA013F_A02_BE405834Ld03P032A01P032A07F1_016.ab1   189 
  253  C USDA013R_A02_BE405834Ld03P032A01P032A07R1_016.ab1   612 
  257    USDA013F_A02_BE405834Ld03P032A01P032A07F1_016.ab1   205 
  277  C USDA013R_A02_BE405834Ld03P032A01P032A07R1_016.ab1   588 
  289    USDA013F_A02_BE405834Ld03P032A01P032A07F1_016.ab1   237 
  293  C USDA013R_A02_BE405834Ld03P032A01P032A07R1_016.ab1   572 
  297    USDA013F_A02_BE405834Ld03P032A01P032A07F1_016.ab1   245 
  301  C USDA013R_A02_BE405834Ld03P032A01P032A07R1_016.ab1   564 
  337    USDA013F_A02_BE405834Ld03P032A01P032A07F1_016.ab1   285 
  341  C USDA013R_A02_BE405834Ld03P032A01P032A07R1_016.ab1   524 
Contig length: old 864, new 864

Contig length: old 864, new 864
New start: 0