No. words: 1080; after pruning: 1054


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.9 (1,1:877)  168  3.98 0.50 0.00  USDA013F_F02_BE405834Ld08P032A01P032A07F1_006.ab1       12   212 (0)  C USDA013R_F02_BE405834Ld08P032A01P032A07R1_006.ab1   (0)   868   667 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1    USDA013F_F02_BE405834Ld08P032A01P032A07F1_006.ab1     1 
   16  C USDA013R_F02_BE405834Ld08P032A01P032A07R1_006.ab1   864 
   27    USDA013F_F02_BE405834Ld08P032A01P032A07F1_006.ab1    26 
   43  C USDA013R_F02_BE405834Ld08P032A01P032A07R1_006.ab1   837 
   59    USDA013F_F02_BE405834Ld08P032A01P032A07F1_006.ab1    58 
   67  C USDA013R_F02_BE405834Ld08P032A01P032A07R1_006.ab1   813 
   71    USDA013F_F02_BE405834Ld08P032A01P032A07F1_006.ab1    70 
   83  C USDA013R_F02_BE405834Ld08P032A01P032A07R1_006.ab1   797 
  116    USDA013F_F02_BE405834Ld08P032A01P032A07F1_006.ab1   115 
  128  C USDA013R_F02_BE405834Ld08P032A01P032A07R1_006.ab1   752 
Contig length: old 878, new 879

Contig length: old 879, new 879
New start: 0