No. words: 1134; after pruning: 1108


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 2.2 (1,1:793)  270  2.28 0.33 0.33  USDA013F_A01_BE405834Tu01P032A01P032A07F1_015.ab1        1   307 (4)  C USDA013R_A01_BE405834Tu01P032A01P032A07R1_015.ab1   (29)   794   488 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  130 nodes

 67 str. conn. components

Path
    1  C USDA013R_A01_BE405834Tu01P032A01P032A07R1_015.ab1   823 
   60    USDA013F_A01_BE405834Tu01P032A01P032A07F1_015.ab1    30 
   80  C USDA013R_A01_BE405834Tu01P032A01P032A07R1_015.ab1   744 
   84    USDA013F_A01_BE405834Tu01P032A01P032A07F1_015.ab1    54 
   92  C USDA013R_A01_BE405834Tu01P032A01P032A07R1_015.ab1   732 
  104    USDA013F_A01_BE405834Tu01P032A01P032A07F1_015.ab1    74 
  112  C USDA013R_A01_BE405834Tu01P032A01P032A07R1_015.ab1   712 
  128    USDA013F_A01_BE405834Tu01P032A01P032A07F1_015.ab1    98 
  136  C USDA013R_A01_BE405834Tu01P032A01P032A07R1_015.ab1   688 
  140    USDA013F_A01_BE405834Tu01P032A01P032A07F1_015.ab1   110 
  148  C USDA013R_A01_BE405834Tu01P032A01P032A07R1_015.ab1   676 
  152    USDA013F_A01_BE405834Tu01P032A01P032A07F1_015.ab1   122 
  156  C USDA013R_A01_BE405834Tu01P032A01P032A07R1_015.ab1   668 
  176    USDA013F_A01_BE405834Tu01P032A01P032A07F1_015.ab1   146 
  187  C USDA013R_A01_BE405834Tu01P032A01P032A07R1_015.ab1   637 
Contig length: old 823, new 823

Contig length: old 823, new 823
New start: 0