No. words: 1033; after pruning: 1007


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 2.0 (1,1:786)  186  1.44 0.48 0.48  USDA013F_B01_BE405834Tu02P032A01P032A07F1_013.ab1        2   210 (0)  C USDA013R_B01_BE405834Tu02P032A01P032A07R1_013.ab1   (37)   786   578 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  94 nodes

 49 str. conn. components

Path
    1  C USDA013R_B01_BE405834Tu02P032A01P032A07R1_013.ab1   823 
   62    USDA013F_B01_BE405834Tu02P032A01P032A07F1_013.ab1    25 
   78  C USDA013R_B01_BE405834Tu02P032A01P032A07R1_013.ab1   746 
   86    USDA013F_B01_BE405834Tu02P032A01P032A07F1_013.ab1    49 
   90  C USDA013R_B01_BE405834Tu02P032A01P032A07R1_013.ab1   734 
  102    USDA013F_B01_BE405834Tu02P032A01P032A07F1_013.ab1    65 
  114  C USDA013R_B01_BE405834Tu02P032A01P032A07R1_013.ab1   710 
  145    USDA013F_B01_BE405834Tu02P032A01P032A07F1_013.ab1   109 
  153  C USDA013R_B01_BE405834Tu02P032A01P032A07R1_013.ab1   671 
Contig length: old 823, new 823

Contig length: old 823, new 823
New start: 0