No. words: 1725; after pruning: 1699


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.5 (1,1:1161)  551  0.00 0.00 0.00  USDA031F_C03_BE406516As01P004F06P004F121F3_027.ab1      284   846 (0)  C USDA031R_C03_BE406516As01P004F06P004F121R3_027.ab1   (0)   879   317 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1    USDA031F_C03_BE406516As01P004F06P004F121F3_027.ab1     1 
  555  C USDA031R_C03_BE406516As01P004F06P004F121R3_027.ab1   608 
  571    USDA031F_C03_BE406516As01P004F06P004F121F3_027.ab1   571 
  583  C USDA031R_C03_BE406516As01P004F06P004F121R3_027.ab1   580 
  595    USDA031F_C03_BE406516As01P004F06P004F121F3_027.ab1   595 
  599  C USDA031R_C03_BE406516As01P004F06P004F121R3_027.ab1   564 
  619    USDA031F_C03_BE406516As01P004F06P004F121F3_027.ab1   619 
  635  C USDA031R_C03_BE406516As01P004F06P004F121R3_027.ab1   528 
Contig length: old 1162, new 1162

Contig length: old 1162, new 1162
New start: 0