No. words: 1740; after pruning: 1714


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:1185)  545  0.00 0.00 0.00  USDA031F_D03_BE406516As02P004F06P004F121F3_025.ab1      262   815 (0)  C USDA031R_D03_BE406516As02P004F06P004F121R3_025.ab1   (0)   925   372 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  278 nodes

 141 str. conn. components

Path
    1    USDA031F_D03_BE406516As02P004F06P004F121F3_025.ab1     1 
  490  C USDA031R_D03_BE406516As02P004F06P004F121R3_025.ab1   697 
  498    USDA031F_D03_BE406516As02P004F06P004F121F3_025.ab1   498 
  526  C USDA031R_D03_BE406516As02P004F06P004F121R3_025.ab1   661 
  534    USDA031F_D03_BE406516As02P004F06P004F121F3_025.ab1   534 
  542  C USDA031R_D03_BE406516As02P004F06P004F121R3_025.ab1   645 
  570    USDA031F_D03_BE406516As02P004F06P004F121F3_025.ab1   570 
  578  C USDA031R_D03_BE406516As02P004F06P004F121R3_025.ab1   609 
  586    USDA031F_D03_BE406516As02P004F06P004F121F3_025.ab1   586 
  590  C USDA031R_D03_BE406516As02P004F06P004F121R3_025.ab1   597 
Contig length: old 1186, new 1186

Contig length: old 1186, new 1186
New start: 0