No. words: 1549; after pruning: 1523


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.2 (1,1:1199)  326  0.29 0.00 0.57  USDA031F_E03_BE406516At01P004F06P004F121F3_023.ab1      284   633 (0)  C USDA031R_E03_BE406516At01P004F06P004F121R3_023.ab1   (0)   916   569 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  164 nodes

 84 str. conn. components

Path
    1    USDA031F_E03_BE406516At01P004F06P004F121F3_023.ab1     1 
  501  C USDA031R_E03_BE406516At01P004F06P004F121R3_023.ab1   701 
  513    USDA031F_E03_BE406516At01P004F06P004F121F3_023.ab1   513 
  525  C USDA031R_E03_BE406516At01P004F06P004F121R3_023.ab1   677 
  529    USDA031F_E03_BE406516At01P004F06P004F121F3_023.ab1   529 
  537  C USDA031R_E03_BE406516At01P004F06P004F121R3_023.ab1   665 
Contig length: old 1200, new 1201

Contig length: old 1201, new 1201
New start: 0