No. words: 1694; after pruning: 1668


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.8 (1,1:1162)  524  0.00 0.00 0.00  USDA031F_F03_BE406516At02P004F06P004F121F3_021.ab1      248   778 (0)  C USDA031R_F03_BE406516At02P004F06P004F121R3_021.ab1   (0)   916   386 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1    USDA031F_F03_BE406516At02P004F06P004F121F3_021.ab1     1 
  543  C USDA031R_F03_BE406516At02P004F06P004F121R3_021.ab1   621 
  551    USDA031F_F03_BE406516At02P004F06P004F121F3_021.ab1   551 
  571  C USDA031R_F03_BE406516At02P004F06P004F121R3_021.ab1   593 
Contig length: old 1163, new 1163

Contig length: old 1163, new 1163
New start: 0