No. words: 1757; after pruning: 1731


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.1 (1,1:1183)  548  0.35 0.00 0.52  USDA031F_G04_BE406516Ld09P004F06P004F121F3_020.ab1      229   803 (0)  C USDA031R_G04_BE406516Ld09P004F06P004F121R3_020.ab1   (0)   954   383 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1    USDA031F_G04_BE406516Ld09P004F06P004F121F3_020.ab1     1 
  621  C USDA031R_G04_BE406516Ld09P004F06P004F121R3_020.ab1   565 
Contig length: old 1184, new 1185

Contig length: old 1185, new 1185
New start: 0