No. words: 1653; after pruning: 1627


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.7 (1,1:1182)  449  0.21 0.21 0.21  USDA031F_A03_BE406516Tu01P004F06P004F121F3_031.ab1      324   792 (0)  C USDA031R_A03_BE406516Tu01P004F06P004F121R3_031.ab1   (0)   861   393 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1    USDA031F_A03_BE406516Tu01P004F06P004F121F3_031.ab1     1 
  551  C USDA031R_A03_BE406516Tu01P004F06P004F121R3_031.ab1   633 
  555    USDA031F_A03_BE406516Tu01P004F06P004F121F3_031.ab1   555 
  587  C USDA031R_A03_BE406516Tu01P004F06P004F121R3_031.ab1   597 
  603    USDA031F_A03_BE406516Tu01P004F06P004F121F3_031.ab1   603 
  607  C USDA031R_A03_BE406516Tu01P004F06P004F121R3_031.ab1   577 
  615    USDA031F_A03_BE406516Tu01P004F06P004F121F3_031.ab1   615 
  623  C USDA031R_A03_BE406516Tu01P004F06P004F121R3_031.ab1   561 
Contig length: old 1183, new 1183

Contig length: old 1183, new 1183
New start: 0