No. words: 724; after pruning: 698 Histogram of relative pair offsets, for read pairs with multiple alignments: Pass 1 Gap Score Pass: 1 #reads #contigs (not counting singlets) 1 2 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Pass 3 Gap Score Pass: 3 #reads #contigs (not counting singlets) 1 2 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score Gap # merges # failures size Offset Pass 4 Gap Score Merge:(0) 1 -4.7 -4.7 (1,1:333) 191 10.98 1.52 0.30 USDA003F_E07_BE407013At01P004H01H07F1_051.ab1 3 330 (38) C USDA003R_E07_BE407013At01P004H01H07R1_051.ab1 (23) 333 2 * Worst pair: offset 0 LLR breakdown: discreps: -9.9 (<20 part: -9.9 (#=42), >20:0.0 (#=0); in HQ: -9.9, out HQ 0.0), match: 6.5 trail: -0.6 lead: -0.7 total: -4.7 191 10.98 1.52 0.30 USDA003F_E07_BE407013At01P004H01H07F1_051.ab1 3 330 (38) C USDA003R_E07_BE407013At01P004H01H07R1_051.ab1 (23) 333 2 * Pass: 4 #reads #contigs (not counting singlets) 2 1 N.B. Following not based on all pairs!! Lowest # merges # failures LLR score -4.7 1 0 Gap # merges # failures size 1 1 0 Offset 0 1 Read equivalence class histogram: 1 2 Chimera merges: Contig 1: 72 nodes 38 str. conn. components Path 1 C USDA003R_E07_BE407013At01P004H01H07R1_051.ab1 356 41 USDA003F_E07_BE407013At01P004H01H07F1_051.ab1 20 76 C USDA003R_E07_BE407013At01P004H01H07R1_051.ab1 281 80 USDA003F_E07_BE407013At01P004H01H07F1_051.ab1 59 104 C USDA003R_E07_BE407013At01P004H01H07R1_051.ab1 253 108 USDA003F_E07_BE407013At01P004H01H07F1_051.ab1 87 306 C USDA003R_E07_BE407013At01P004H01H07R1_051.ab1 47 336 USDA003F_E07_BE407013At01P004H01H07F1_051.ab1 315 Contig length: old 390, new 389 Contig length: old 389, new 390 New start: 0 S Change at: 30; seg lengths: entry 4, contig 4 S Change at: 258; seg lengths: entry 1, contig 1 I Change at: 272; seg lengths: entry 3, contig 2 S Change at: 278; seg lengths: entry 6, contig 6